We had the fantastic opportunity to present the neurodesk project in today’s ANZ ISMRM reproducibility workshop. The 50 participants across Australia got to see the first live demo of the project and I am glad everything worked out and ran smoothly 🙂 We will post the recordings as soon as Read more…
I had the great opportunity to present in the AARnet Reseracher Talks webinar Winter Series 2021 and in this Research Showcase Webinar I highlighted interoperability examples between AARnet CloudStor with external tools and services like Zotero, the open science foundation (OSF) or high-performance computing clusters. I showed how CloudStor can Read more…
When using a High Performance Computing System you also might have run into the problem of how to get data in and out of this system. We are very lucky in Australia to have CloudStor, which is Aarnets hosted OwnCloud version with 1TB of storage available for every researcher and Read more…
Zotero is an open source reference and citation management tool that probably everyone knows and loves. Zotero stores the PDFs of publicaitons and books and when you want to keep your library synchronized you need some central storage. Now it’s important to stress that it’s a very bad idea to Read more…
This is the educational talk I prepared for ISMRM 2021 about Quantitative Susceptibility Mapping: The slides are here: I also prepared a computational notebook that illustrates some of the concepts interactively in code: http://bit.ly/ISMRM-QSM-2021 (or https://colab.research.google.com/drive/10iyYqhzF-U5NOTjIT_jqEr5mAH-aew-k?usp=sharing)
I was recently invited to join the panel for an @OSFramework webinar on Leveraging Open Ecosystems to Enhance Reproducible Workflows: The webinar covers OSF integration with @protocolsIO, R @aaronwolen, command line interfaces and jupyter notebooks – thank you for the great discussions!
Here is a little tutorial on running our NeuroDesk project in the free tier of Oracle cloud 🙂 Sign up for a free account here: Try Free Tier (oracle.com) The below steps are for an older version of the neurodesk project – I recommend to follow the updated instructions here: Read more…
For this year’s AICI artificial intelligence in clinical imaging forum I prepared a tutorial for applying deep learning models to medical imaging data. It was very interesting to prepare the tutorial and see what models exist and how difficult it still is to make them work with real data. Here Read more…