Containers
Behind the scenes of NeuroDesk : What we learned so far in building and distributing containers in a community driven fashion
These are the slides for the talk I gave at the ARCOS Symposium in November 2021:
CloudStor
Neurodesk at the ANZ ISMRM reproducibility workshop
We had the fantastic opportunity to present the neurodesk project in today’s ANZ ISMRM reproducibility workshop. The 50 participants across Australia got to see the first live demo of the project and I am glad everything worked out and ran smoothly 🙂 We will post the recordings as soon as Read more…
Functional Imaging
Higher, faster, smaller: Pushing the limits of fMRI at ultra-high field
Today I had the pleasure of presenting in the fortnightly Melbourne Brain Centre Imaging Unit (MBCIU) seminar at the University of Melbourne. I took the opportunity to share some thoughts and insights about fast and high-resolution fMRI at 7T. This presentation covers some of the most prevalent sequences (SMS, 3D-EPI), Read more…
CloudStor
Interoperability Between AARNet Cloudstor and External Services – Researcher Talks Webinar
I had the great opportunity to present in the AARnet Reseracher Talks webinar Winter Series 2021 and in this Research Showcase Webinar I highlighted interoperability examples between AARnet CloudStor with external tools and services like Zotero, the open science foundation (OSF) or high-performance computing clusters. I showed how CloudStor can Read more…
Deep Learning
ML4AU – Showcase event ML/AI in Imaging
I recently had the wonderful opportunity to present our deep learning work in magnetic resonance imaging at the ML4AU CoP showcase event to more than 65 participants. I showed one example on efficiently solving an ill-posed inverse problem for quantitative susceptibility mapping that was trained with purely synthetic data describing Read more…
Conferences
NeuroDesk explained in 2 minutes
For the OHBM 2021 I created a short 2 minute summary of our NeuroDesk project 🙂
Functional Imaging
Fast fMRI Acqusitions and Analyses – Spinoza User Meeting
I was invited to present my view on fast fMRI acquisitions and analyses at the Spinoza User Meeting (Spinoza Centre for Neuroimaging, Amsterdam, Netherlands) in May 2021. Below you can find the slides, which I hope are a useful resource summarizing what’s currently available and what acquisitions might become possible Read more…
Conferences
ISMRM 2021 Educational Talk on Quantitative Susceptibility Mapping
This is the educational talk I prepared for ISMRM 2021 about Quantitative Susceptibility Mapping: The slides are here: I also prepared a computational notebook that illustrates some of the concepts interactively in code: http://bit.ly/ISMRM-QSM-2021 (or https://colab.research.google.com/drive/10iyYqhzF-U5NOTjIT_jqEr5mAH-aew-k?usp=sharing)
Data management
Leveraging Open Ecosystems to Enhance Reproducible Workflows
I was recently invited to join the panel for an @OSFramework webinar on Leveraging Open Ecosystems to Enhance Reproducible Workflows: The webinar covers OSF integration with @protocolsIO, R @aaronwolen, command line interfaces and jupyter notebooks – thank you for the great discussions!
Conferences
Applying Deep Learning Models to Medical Imaging Data – Problems, Pitfalls, Solutions – A tutorial
For this year’s AICI artificial intelligence in clinical imaging forum I prepared a tutorial for applying deep learning models to medical imaging data. It was very interesting to prepare the tutorial and see what models exist and how difficult it still is to make them work with real data. Here Read more…