TOMCAT dataset on Oracle Open Data

Oracle Cloud recently launched a platform to host scientific datasets and we uploaded our unique Hippocampus dataset (Towards Optimising MRI Characterisation of Tissue (TOMCAT) Dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data – ScienceDirect): https://opendata.oraclecloud.com/ords/r/opendata/opendata/details?data_set_id=28&bucket_name=TOMCAT&prefix=&clear=RR&session=610618357889967&cs=1o7GdDLNfm3PHWwxI2thFXrA8jHPcvjZCdFibkYYIPPofNfOuvVt8B6S0B7YTnzIOf6cDk9BXW5hSV9b8LmhoQA More background can be found in this blogpost: Oracle Open Data platform Read more…

Combining conda and google colab

Sometimes it’s necessary to downgrade packages in google colab to restore compatibility with an older version (e.g. pytorch). One way of doing this is using conda within colab and a few tricks make this work. Here is the colab notebook: https://colab.research.google.com/drive/1W5UnflB8m1zo6lP1y11V78QczMRBI0FE?usp=sharing Here a quick code gist:

Zotero and Cloudstor

Zotero is an open source reference and citation management tool that probably everyone knows and loves. Zotero stores the PDFs of publicaitons and books and when you want to keep your library synchronized you need some central storage. Now it’s important to stress that it’s a very bad idea to Read more…

ARC Linkage Grant

I am extremely lucky to have been awarded an ARC Linkage grant together with our partner Siemens Healthineers to advance deep learning applications for medical imaging in the next 3 years. It’s not just exciting because this is my first grant I have ever won, but also because this project Read more…