Containers
Behind the scenes of NeuroDesk : What we learned so far in building and distributing containers in a community driven fashion
These are the slides for the talk I gave at the ARCOS Symposium in November 2021:
Containers
QSMxT: Robust masking and artifact reduction for quantitative susceptibility mapping
Our article “QSMxT: Robust masking and artifact reduction for quantitative susceptibility mapping” was just published in MRM 🙂 In this article we developed an automated, scalable, and robust QSM workflow that starts from Dicom images and produces segmentations of regions Read more…
CloudStor
Neurodesk at the ANZ ISMRM reproducibility workshop
We had the fantastic opportunity to present the neurodesk project in today’s ANZ ISMRM reproducibility workshop. The 50 participants across Australia got to see the first live demo of the project and I am glad everything worked out and ran Read more…
Functional Imaging
Higher, faster, smaller: Pushing the limits of fMRI at ultra-high field
Today I had the pleasure of presenting in the fortnightly Melbourne Brain Centre Imaging Unit (MBCIU) seminar at the University of Melbourne. I took the opportunity to share some thoughts and insights about fast and high-resolution fMRI at 7T. This Read more…
CloudStor
Interoperability Between AARNet Cloudstor and External Services – Researcher Talks Webinar
I had the great opportunity to present in the AARnet Reseracher Talks webinar Winter Series 2021 and in this Research Showcase Webinar I highlighted interoperability examples between AARnet CloudStor with external tools and services like Zotero, the open science foundation Read more…
Deep Learning
ML4AU – Showcase event ML/AI in Imaging
I recently had the wonderful opportunity to present our deep learning work in magnetic resonance imaging at the ML4AU CoP showcase event to more than 65 participants. I showed one example on efficiently solving an ill-posed inverse problem for quantitative Read more…
CloudStor
CloudStor and High Performance Computing Systems
When using a High Performance Computing System you also might have run into the problem of how to get data in and out of this system. We are very lucky in Australia to have CloudStor, which is Aarnets hosted OwnCloud Read more…
CloudStor
Zotero and Cloudstor
Zotero is an open source reference and citation management tool that probably everyone knows and loves. Zotero stores the PDFs of publicaitons and books and when you want to keep your library synchronized you need some central storage. Now it’s Read more…
Funding
ARC Linkage Grant
I am extremely lucky to have been awarded an ARC Linkage grant together with our partner Siemens Healthineers to advance deep learning applications for medical imaging in the next 3 years. It’s not just exciting because this is my first Read more…
Deep Learning
NeXtQSM preprint
Our new preprint is online. NeXtQSM is a deep learning pipeline for data-consistent quantitative susceptibility mapping trained with simulated data build by our CIBIT MPhil student Francesco Cognolato: [2107.07752] NeXtQSM — A complete deep learning pipeline for data-consistent quantitative susceptibility Read more…