I was recently invited to join the panel for an @OSFramework webinar on Leveraging Open Ecosystems to Enhance Reproducible Workflows: The webinar covers OSF integration with @protocolsIO, R @aaronwolen, command line interfaces and jupyter notebooks – thank you for the Read more…
Although NeuroDesk is still a young project we already have users outside of Australia. This led to a few problems: our singularity containers are stored on Swift object storage on the Nectar Research Cloud and users outside of Australia saw Read more…
Cloudstor is a wonderful storage service providing 1TB of owncloud storage for researchers in Australia. It’s like dropbox, but your data is in Australia, very fast to access from aarnet institutions and they provide a jupyter notebook service SWAN that Read more…
Here is a little tutorial on running our NeuroDesk project in the free tier of Oracle cloud 🙂 Sign up for a free account here: Try Free Tier (oracle.com) now connect to your newly created instance (the public IP is Read more…
For this year’s AICI artificial intelligence in clinical imaging forum I prepared a tutorial for applying deep learning models to medical imaging data. It was very interesting to prepare the tutorial and see what models exist and how difficult it Read more…
This week I attended the eResearch Australasia conference and gave a talk about our little hackathon project that started at the OHBM Brainhack this year: https://github.com/NeuroDesk/. In a nutshell, we are trying to make it a lot easier to use Read more…
The Australian ultra-high field community had its first virtual workshop organized by Leigh Johnston, Markus Barth and Kieran O’Brien. I was invited to talk about high-resolution fMRI and how it is currently used for neuroscience research. I thought I share Read more…
The full publication can be found here: https://doi.org/10.1002/mrm.28590 The preprint is here: [1911.08118] Improving FLAIR SAR efficiency at 7T by adaptive tailoring of adiabatic pulse power using deep convolutional neural networks (arxiv.org) The data used to train the model is Read more…
For this year’s ISMRM, I’ve investigated how we can image the pial arterial vasculature using a time-of flight contrast. Surprisingly, we found that we are not limited by physiological parameters, but ‘simply’ by the voxel size. All the gory details Read more…
Tom Shaw and I prepared a talk for this year’s OHBM Brainhack Trainhack where we show what containers are and how to use them for neuroscience applications. We cover docker and singularity and show how to build and run containers Read more…