Although NeuroDesk is still a young project we already have users outside of Australia. This led to a few problems: our singularity containers are stored on Swift object storage on the Nectar Research Cloud and users outside of Australia saw very slow downloads of the containers there is only a Read more…
Here is a little tutorial on running our NeuroDesk project in the free tier of Oracle cloud 🙂 Sign up for a free account here: Try Free Tier (oracle.com) now connect to your newly created instance (the public IP is displayed when the instance is running) including some port forwardings: Read more…
For this year’s AICI artificial intelligence in clinical imaging forum I prepared a tutorial for applying deep learning models to medical imaging data. It was very interesting to prepare the tutorial and see what models exist and how difficult it still is to make them work with real data. Here Read more…
This week I attended the eResearch Australasia conference and gave a talk about our little hackathon project that started at the OHBM Brainhack this year: https://github.com/NeuroDesk/. In a nutshell, we are trying to make it a lot easier to use neuroimaging software packages with the help of containers. The feedback Read more…
Tom Shaw and I prepared a talk for this year’s OHBM Brainhack Trainhack where we show what containers are and how to use them for neuroscience applications. We cover docker and singularity and show how to build and run containers on different computing platforms. Video: Code to hack along: https://hackmd.io/ep87sx8ERMWFYc4D0FisRw Read more…
Thanks to Tomas I submitted an abstract to the Linux conference Australia and I was very lucky that I was invited to present. This was my first Linux conference and it was a great experience – all talks I saw had a very high quality and I learned a lot Read more…