Containers
ReproNim Talk about Neurodesk
I was recently invited to talk about Neurodesk in the ReproNim webinar. The recording of the talk is available here: The slides are available here:
Conferences
Talk about Open Data and Neurodesk at MRItogether
This week I gave a talk about the Open Data ecosystem and how our open-source project https://NeuroDesk.org makes it very easy to access and publish open data. Here is the recording: Here are the slides:
Containers
Behind the scenes of NeuroDesk : What we learned so far in building and distributing containers in a community driven fashion
These are the slides for the talk I gave at the ARCOS Symposium in November 2021:
CloudStor
Neurodesk at the ANZ ISMRM reproducibility workshop
We had the fantastic opportunity to present the neurodesk project in today’s ANZ ISMRM reproducibility workshop. The 50 participants across Australia got to see the first live demo of the project and I am glad everything worked out and ran smoothly 🙂 We will post the recordings as soon as Read more
CloudStor
Interoperability Between AARNet Cloudstor and External Services – Researcher Talks Webinar
I had the great opportunity to present in the AARnet Reseracher Talks webinar Winter Series 2021 and in this Research Showcase Webinar I highlighted interoperability examples between AARnet CloudStor with external tools and services like Zotero, the open science foundation (OSF) or high-performance computing clusters. I showed how CloudStor can Read more
CloudStor
CloudStor and High Performance Computing Systems
When using a High Performance Computing System you also might have run into the problem of how to get data in and out of this system. We are very lucky in Australia to have CloudStor, which is Aarnets hosted OwnCloud version with 1TB of storage available for every researcher and Read more
CloudStor
Zotero and NextCloud
Zotero is an open source reference and citation management tool that probably everyone knows and loves. Zotero stores the PDFs of publicaitons and books and when you want to keep your library synchronized you need some central storage. Now it’s important to stress that it’s a very bad idea to Read more
Conferences
ISMRM 2021 Educational Talk on Quantitative Susceptibility Mapping
This is the educational talk I prepared for ISMRM 2021 about Quantitative Susceptibility Mapping: The slides are here: I also prepared a computational notebook that illustrates some of the concepts interactively in code: http://bit.ly/ISMRM-QSM-2021 (or https://colab.research.google.com/drive/10iyYqhzF-U5NOTjIT_jqEr5mAH-aew-k?usp=sharing)
Data management
Leveraging Open Ecosystems to Enhance Reproducible Workflows
I was recently invited to join the panel for an @OSFramework webinar on Leveraging Open Ecosystems to Enhance Reproducible Workflows: The webinar covers OSF integration with @protocolsIO, R @aaronwolen, command line interfaces and jupyter notebooks – thank you for the great discussions!
Code
Run NeuroDesk on Oracle Cloud Free Tier
Here is a little tutorial on running our NeuroDesk project in the free tier of Oracle cloud 🙂 Sign up for a free account here: Try Free Tier (oracle.com) The below steps are for an older version of the neurodesk project – I recommend to follow the updated instructions here: Read more