Publishing – mri.sbollmann.net

TOMCAT dataset on Oracle Open Data

Oracle Cloud recently launched a platform to host scientific datasets and we uploaded our unique Hippocampus dataset (Towards Optimising MRI Characterisation of Tissue (TOMCAT) Dataset including all Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) data – ScienceDirect): https://opendata.oraclecloud.com/ords/r/opendata/opendata/details?data_set_id=28&bucket_name=TOMCAT&prefix=&clear=RR&session=610618357889967&cs=1o7GdDLNfm3PHWwxI2thFXrA8jHPcvjZCdFibkYYIPPofNfOuvVt8B6S0B7YTnzIOf6cDk9BXW5hSV9b8LmhoQA More background can be found in this blogpost: Oracle Open Data platform Read more

By Steffen, 3 yearsApril 25, 2022 ago

CloudStor

Zotero and NextCloud

Zotero is an open source reference and citation management tool that probably everyone knows and loves. Zotero stores the PDFs of publicaitons and books and when you want to keep your library synchronized you need some central storage. Now it’s important to stress that it’s a very bad idea to Read more

By Steffen, 4 yearsAugust 3, 2021 ago

Data management

MRM Highlights feature

We were very fortunate to be highlighted in MRM for our paper “Improving FLAIR SAR efficiency at 7T by adaptive tailoring of adiabatic pulse power through deep learning B1+ estimation” and the reproducible research habits in our group 🙂 The interview covering the contents of the paper can be found Read more

By Steffen, 4 yearsApril 30, 2021 ago

CloudStor

Connect AARNET Cloudstor with OSF

Cloudstor is a wonderful storage service providing 1TB of owncloud storage for researchers in Australia. It’s like dropbox, but your data is in Australia, very fast to access from aarnet institutions and they provide a jupyter notebook service SWAN that can directly access this data 🙂 Wouldn’t it be nice Read more

By Steffen, 5 yearsJanuary 10, 2021 ago

Code

Building an Interactive paper supplement with Google Colab and the Open Science Foundation

For a paper we recently submitted (Improving FLAIR SAR efficiency at 7T by adaptive tailoring of adiabatic pulse power using deep convolutional neural networks – pre-print here: https://arxiv.org/abs/1911.08118 and published article here: https://doi.org/10.1002/mrm.28590) I was wondering if we can do more than just provide the source code. One problem I Read more

By Steffen, 5 yearsMay 27, 2020 ago

Functional Imaging

fMRI in context: Paradigm to practice

This talk was part of the 2015 fMRI course at the Centre for Advanced Imaging, University of Queensland, Brisbane, Australia Contents: the problems of p-values reproducibility problems questionable research practices and how to avoid them

By Steffen, 10 yearsNovember 13, 2015 ago