I was recently invited to join the panel for an @OSFramework webinar on Leveraging Open Ecosystems to Enhance Reproducible Workflows: The webinar covers OSF integration with @protocolsIO, R @aaronwolen, command line interfaces and jupyter notebooks – thank you for the great discussions!
For this year’s AICI artificial intelligence in clinical imaging forum I prepared a tutorial for applying deep learning models to medical imaging data. It was very interesting to prepare the tutorial and see what models exist and how difficult it still is to make them work with real data. Here Read more…
This week I attended the eResearch Australasia conference and gave a talk about our little hackathon project that started at the OHBM Brainhack this year: https://github.com/NeuroDesk/. In a nutshell, we are trying to make it a lot easier to use neuroimaging software packages with the help of containers. The feedback Read more…
The Australian ultra-high field community had its first virtual workshop organized by Leigh Johnston, Markus Barth and Kieran O’Brien. I was invited to talk about high-resolution fMRI and how it is currently used for neuroscience research. I thought I share the slides of my talk, which summarizes some of our Read more…
For this year’s ISMRM, I’ve investigated how we can image the pial arterial vasculature using a time-of flight contrast. Surprisingly, we found that we are not limited by physiological parameters, but ‘simply’ by the voxel size. All the gory details can be found in the video below. Note that this Read more…
Tom Shaw and I prepared a talk for this year’s OHBM Brainhack Trainhack where we show what containers are and how to use them for neuroscience applications. We cover docker and singularity and show how to build and run containers on different computing platforms. Video: Code to hack along: https://hackmd.io/ep87sx8ERMWFYc4D0FisRw Read more…
For the 2020 OHBM Brainhack we made a little tutorial explaining git and github. We hope it’s useful and thanks to the organizers for putting this great event together 🙂 Video: Slides:
During our last week in Boston, I was invited to give a talk in the Science on Tap Seminar. Science on tap is a fantastic iniative driven by dedicated early career researchers that organise a talk with drinks and nibbles every Friday afternoon at the Martinos Center. The talk should Read more…
Vascularisation of the human brain obtained with magnetic resonance angiography at 160µm isotropic resolution at 7 Tesla. During the Science-on-Tap meeting at the Martinos Center, MGH, I gave a brief introduction into the fundamental principles of magnetic resonance angiography, and how we can use it to map the pial arterial Read more…
I was invited to present a tutorial about deepQSM during the 2019 OHBM educational session meeting in Rome. The tutorial recording is here and starts at 1:16:56: The interactive code is here: The slides: