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High Performance Computing

Containers

ReproNim Talk about Neurodesk

I was recently invited to talk about Neurodesk in the ReproNim webinar. The recording of the talk is available here: The slides are available here:

By Steffen, 2 yearsMarch 6, 2023 ago
Containers

QSMxT: Robust masking and artifact reduction for quantitative susceptibility mapping

Our article “QSMxT: Robust masking and artifact reduction for quantitative susceptibility mapping” was just published in MRM 🙂 In this article we developed an automated, scalable, and robust QSM workflow that starts from Dicom images and produces segmentations of regions of interest: The full paper is here (unfortunately behind a Read more…

By Steffen, 4 yearsNovember 3, 2021 ago
CloudStor

Neurodesk at the ANZ ISMRM reproducibility workshop

We had the fantastic opportunity to present the neurodesk project in today’s ANZ ISMRM reproducibility workshop. The 50 participants across Australia got to see the first live demo of the project and I am glad everything worked out and ran smoothly 🙂 We will post the recordings as soon as Read more…

By Steffen, 4 yearsSeptember 20, 2021 ago
CloudStor

Interoperability Between AARNet Cloudstor and External Services – Researcher Talks Webinar

I had the great opportunity to present in the AARnet Reseracher Talks webinar Winter Series 2021 and in this Research Showcase Webinar I highlighted interoperability examples between AARnet CloudStor with external tools and services like Zotero, the open science foundation (OSF) or high-performance computing clusters. I showed how CloudStor can Read more…

By Steffen, 4 yearsAugust 6, 2021 ago
CloudStor

CloudStor and High Performance Computing Systems

When using a High Performance Computing System you also might have run into the problem of how to get data in and out of this system. We are very lucky in Australia to have CloudStor, which is Aarnets hosted OwnCloud version with 1TB of storage available for every researcher and Read more…

By Steffen, 4 yearsAugust 3, 2021 ago
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